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MassBank in silico is a library of MS/MS spectra predicted in silico from compound structures.
Users can input precursor m/z and MS/MS spectra in text format, and compare them with in silico-predicted MS/MS spectra generated from human-related metabolites registered in HMDB and KEGG, enabling structure annotation.

To perform an analysis, users need to provide the following minimum information:

  • ESI type
    [M+H]+, [M-H]-, [M+Na]+, [M+K]+, [M+NH4]+, [M+Cl]-, or [M+FA-H]-
  • Precursor m/z
    Observed precursor m/z is used as input.
  • Precursor m/z tolerance
    Default: 5 ppm
  • Fragment mass tolerance
    Default: 50 ppm
  • HRMS/MS spectra
    Plain text format, one peak per line.

Structural Annotation

Structural Annotation (Batch Processing)

Input format: SampleID_PrecursorMz_MS2mz_intensity_MS2mz_intensity...
Maximum batch size: 100 records.